ArticleDetection and Characterization of Circulating Tumor Associated Cells in Metastatic Breast CancerZhaomei Mu 1,*, Naoual Benali-Furet 2, Georges Uzan 2, Anaëlle Znaty 2, Zhong Ye 3,Carmela Paolillo 4, Chun Wang 3, Laura Austin 3, Giovanna Rossi 1, Paolo Fortina 4,5,Hushan Yang 3 and Massimo Cristofanilli 1,*1 Department of Medicine-Hematology and Oncology, Robert H Lurie Comprehensive Cancer Center,Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; giovirossi85@yahoo.it2 ScreenCell SA, Sarcelles 95200, France; benali@screencell.com (N.B.-F.); guzan@screencell.com (G.U.);aznaty@screencell.com (A.Z.)3 Department of Medical Oncology, Sidney Kimmel Cancer Center, Thomas Jefferson University,Philadelphia, PA 19107, USA; Zhong.Ye@jefferson.edu (Z.Y.); Chun.Wang@jefferson.edu (C.W.);laustin@gmail.com (L.A.); hushan.yang@jefferson.edu (H.Y.)4 Department of Cancer Biology, Sidney Kimmel Cancer Center, Thomas Jefferson University,Philadelphia, PA 19107, USA; carmela.Paolillo@jefferson.edu (C.P.); paolo.Fortina@jefferson.edu (P.F.)5 Department of Molecular Medicine, University of Rome “Sapienza”, Rome 00185, Italy* Correspondence: zhaomei.mu@northwestern.edu (Z.M.); massimo.cristofanilli@nm.org (M.C.);Tel.: +1-312-503-5489 (Z.M.); +1-312-503-5488 (M.C.)Academic Editor: Dario MarchettiReceived: 5 August 2016; Accepted: 23 September 2016; Published: 30 September 2016Abstract: The availability of blood-based diagnostic testing using a non-invasive technique holdspromise for real-time monitoring of disease progression and treatment selection. Circulating tumorcells (CTCs) have been used as a prognostic biomarker for the metastatic breast cancer (MBC).The molecular characterization of CTCs is fundamental to the phenotypic identification of malignantcells and description of the relevant genetic alterations that may change according to diseaseprogression and therapy resistance. However, the molecular characterization of CTCs remainsa challenge because of the rarity and heterogeneity of CTCs and technological difficulties in theenrichment, isolation and molecular characterization of CTCs. In this pilot study, we evaluatedcirculating tumor associated cells in one blood draw by size exclusion technology and cytologicalanalysis. Among 30 prospectively enrolled MBC patients, CTCs, circulating tumor cell clusters (CTCclusters), CTCs of epithelial–mesenchymal transition (EMT) and cancer associated macrophage-likecells (CAMLs) were detected and analyzed. For molecular characterization of CTCs, size-exclusionmethod for CTC enrichment was tested in combination with DEPArray™ technology, which allowsthe recovery of single CTCs or pools of CTCs as a pure CTC sample for mutation analysis. Genomicmutations of TP53 and ESR1 were analyzed by targeted sequencing on isolated 7 CTCs from a patientwith MBC. The results of genomic analysis showed heterozygous TP53 R248W mutation from onesingle CTC and pools of three CTCs, and homozygous TP53 R248W mutation from one single CTC andpools of two CTCs. Wild-type ESR1 was detected in the same isolated CTCs. The results of this studyreveal that size-exclusion method can be used to enrich and identify circulating tumor associatedcells, and enriched CTCs were characterized for genetic alterations in MBC patients, respectively.Keywords: metastatic breast cancer (MBC); circulating tumor associated cells; circulating tumorcells (CTCs); circulating tumor cell clusters (CTC clusters); epithelial–mesenchymal transition (EMT);cancer associated macrophage-like cells (CAMLs); size-exclusion technology